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structured sbml file biomd151_new.xml  (Biomodels LLC)

 
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    Structured Review

    Biomodels LLC structured sbml file biomd151_new.xml
    The incorrect structure of the corresponding <t>SBML</t> models (93 and 94) of <t>the</t> <t>BioModels</t> database can be automatically fixed by going back to the differential equations and extracting the unique structure fulfilling our three conditions. It then correctly includes the reversibility of reactions (1), (2), (3), (6), etc. highlighted in red, and absent from the BioModels database version.
    Structured Sbml File Biomd151 New.Xml, supplied by Biomodels LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/structured sbml file biomd151_new.xml/product/Biomodels LLC
    Average 90 stars, based on 1 article reviews
    structured sbml file biomd151_new.xml - by Bioz Stars, 2026-06
    90/100 stars

    Images

    1) Product Images from "A Unique Transformation from Ordinary Differential Equations to Reaction Networks"

    Article Title: A Unique Transformation from Ordinary Differential Equations to Reaction Networks

    Journal: PLoS ONE

    doi: 10.1371/journal.pone.0014284

    The incorrect structure of the corresponding SBML models (93 and 94) of the BioModels database can be automatically fixed by going back to the differential equations and extracting the unique structure fulfilling our three conditions. It then correctly includes the reversibility of reactions (1), (2), (3), (6), etc. highlighted in red, and absent from the BioModels database version.
    Figure Legend Snippet: The incorrect structure of the corresponding SBML models (93 and 94) of the BioModels database can be automatically fixed by going back to the differential equations and extracting the unique structure fulfilling our three conditions. It then correctly includes the reversibility of reactions (1), (2), (3), (6), etc. highlighted in red, and absent from the BioModels database version.

    Techniques Used:

    The 68 ODEs actually allow the extraction of a unique model fulfilling the three established conditions. It not only correctly reflects the structure described in the article, but also avoids the typos introduced in the hand-written model 151 of the BioModels database; hand-typing an SBML model for that many ODEs with numerous parameters is definitely error-prone.
    Figure Legend Snippet: The 68 ODEs actually allow the extraction of a unique model fulfilling the three established conditions. It not only correctly reflects the structure described in the article, but also avoids the typos introduced in the hand-written model 151 of the BioModels database; hand-typing an SBML model for that many ODEs with numerous parameters is definitely error-prone.

    Techniques Used: Extraction



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